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Paired Ends Podcast

Stephen Turner

Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming. blog.stephenturner.us

PublishesTwice monthlyEpisodes10Foundeda year ago
Categories
ScienceLife SciencesTechnology

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Artwork for Paired Ends Podcast

Latest Episodes

Moving from biotech to academia

I recently wrote a piece about leaving academia for biotech.

I left academia for industry in 2019. I spent four years at a consulting firm before joining Colossal Biosciences. This week I’m returning to the Universit... more

blog.stephenturner.us/p/ai-in-data-science-education

Something a little different for this week’s recap. I’ve been thinking a lot lately about the practice of data science education in this era of widely available (and really good!) LLMs for... more

blog.stephenturner.us/p/enlightenment-conservatory

I had good intentions to give NaNoWriMo a try this year but didn’t get very far. Instead I gave OpenAI’s Creative Writing Coach GPT a try for a (very) short story I had in mind, inspired by ... more

blog.stephenturner.us/p/weekly-recap-dec-2024-part-3

This week’s recap highlights the Evo model for sequence modeling and design, biomedical discovery with AI agents, improving bioinformatics software quality through teamwork, a new tool fro... more

blog.stephenturner.us/p/weekly-recap-dec-2024-part-2

This week’s recap highlights a new way to turn Nextflow pipelines into web apps, DRAGEN for fast and accurate variant calling, machine-guided design of cell-type-targeting cis-regulatory e... more

blog.stephenturner.us/p/weekly-recap-dec-2024-part-1

This week’s recap highlights the WorkflowHub registry for computational workflows, building a virtual cell with AI, a review on bioinformatics methods for prioritizing causal genetic varia... more

Full recap: blog.stephenturner.us/p/weekly-recap-nov-2024-part-3

This week’s recap highlights pangenome graph construction with nf-core/pangenome, building pangenome graphs with PGGB, benchmarking algorithms for single-cell multi-omics predi... more

blog.stephenturner.us/p/inciteful-zotero-biologpt-semantic-scholar

I am in the middle of writing a review / perspectives paper. One that I’m confident will be exciting once we get it published. Some sections of the review cover subject matte... more

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Paired Ends Podcast launched a year ago and published 10 episodes to date. You can find more information about this podcast including rankings, audience demographics and engagement in our podcast database.

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