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Phase Space Invaders (ψ)

Miłosz Wieczór
Computational Biology
Computational Biophysics
Molecular Simulations
RNA Therapeutics
Scientific Practices
Nucleic Acids
Collaboration In Science
Networking In Science
AI Revolution
Scientific Publishing
Computational Pharmaceuticals
Protein Misfolding
Drug Design
Data Sharing
Force Fields
Metadynamics
Meta-Inference
Social Media In Science
Chromatin Organization
Disordered Proteins

With the convergence of data, computing power, and new methods, computational biology is at its most exciting moment. At PSI, we're asking the leading researchers in the field to discover where we're headed for, and which exciting pathways will take us there. Whether you're just thinking of starting your research career or have been computing stuff for decades, come and join the conversation!

PublishesWeeklyEpisodes33Founded2 years ago
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Life SciencesScience

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Artwork for Phase Space Invaders

Latest Episodes

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Jerome starts our conversation by reviewing the history of the ABF method and its advantages compared to the main competitors, and connects it to the development of COLVARS, historically very parallel to how the development of the Plu... more

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In Episode 28, Yuji Sugita shares the story of how he developed temperature replica exchange in the lab of Yuko Okamoto, connecting to his early experience from working with Nobuhiro Go, the father of Go models. We then talk about the... more

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In episode 27, Kresten starts by explaining his path from a wet lab biochemist to a computational biophysicist, a story full of open-ended explorations and helpful mentors. He gives us some background on how both the legacy and latest... more

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In episode 26, we talk about the origins of Pratyush's passion for statistical mechanics, deeply rooted in his background in material science, and think about how we can promote a profound understanding of statmech theory among people... more

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Recent Guests

Kresten Lindorff-Larsen
Professor at the Department of Biology, University of Copenhagen.
University of Copenhagen
Episode: Episode 27 - Kresten Lindorff-Larsen: Refining force fields, the science of intrinsically disordered proteins, and writing better grant proposals
Pratyush Tiwary
Professor at the Department of Chemistry and Biochemistry at the University of Maryland
University of Maryland
Episode: Episode 26 - Pratyush Tiwary: Infusing AI with physics, understanding emergent phenomena, the value of education and thinking
Ivet Bahar
Director of the Laufer Center for Physical and Quantitative Biology at Stony Brook University
Stony Brook University
Episode: Episode 25 - Ivet Bahar: Elastic network models, targeting hinges for drug discovery, persistence and alertness
Katarzyna Marcinkiewicz
Senior editor at Nature Communications
Nature Communications
Episode: Episode 24 - Katarzyna Marcinkiewicz [Nature Communications]: The job of a full-time editor, transparency and other novelties in publishing, and coaching the review process
Zoe Cournia
Director of Research at the Biomedical Research Foundation at Academy of Athens
Biomedical Research Foundation
Episode: Episode 23 - Zoe Cournia: Precision medicine, designing allosteric drugs, and the role of an academic editor
Tamar Schlick
Professor of Chemistry, Mathematics, and Computer Science at New York University.
New York University
Episode: Episode 21 - Tamar Schlick: A mathematician's path to biology, RNA frameshifting, and why scientists (should!) run
Erik Lindahl
Professor of Biophysics at the University of Stockholm and KTH Royal Institute of Technology, and coordinator of the GROMACS project.
University of Stockholm, KTH Royal Institute of Technology, SciLifeLab
Episode: Episode 18 - Erik Lindahl: Finding simple and novel ideas, starting an experimental lab, and ligand-gated ion channels
Caroline Lynn Kamerlin
Professor of Molecular Design at Georgia Tech and Structural Biology at Uppsala University
Georgia Tech and Uppsala University
Episode: Episode 17 - Caroline Lynn Kamerlin: Deep interdisciplinarity, enzyme promiscuity, and science in society
Janusz Bujnicki
Head of the laboratory of bioinformatics and protein engineering at the International Institute of Molecular and Cell Biology in Warsaw
International Institute of Molecular and Cell Biology
Episode: Episode 16 - Janusz Bujnicki: Structural modeling, RNA modifications, and advising policy-makers on science

Host

Miloš
Host of the Phase Space Invaders, engaging with top researchers in computational biology to discuss their groundbreaking work and the future of the field.

Chart Rankings

How this podcast ranks in the Apple Podcasts, Spotify and YouTube charts.

Talking Points

Recent interactions between the hosts and their guests.

Episode 1 - Pilar Cossio: Modeling experimental setups, overpublishing, and maintaining code
Q: What do you think is undervalued in science?
Pilar highlights the importance of quality coding and maintenance in scientific research, asserting that good software development is crucial for data analysis and simulations but is often not recognized in academic achievements.
Episode 1 - Pilar Cossio: Modeling experimental setups, overpublishing, and maintaining code
Q: Can you first briefly summarize your path to becoming a group leader at Flatiron?
Pilar describes her transition from working on diverse areas of physics and doing her PhD in computational biophysics to leading a group at the Flatiron Institute, emphasizing her interdisciplinary approach and collaboration with various researchers.
Episode 2 - Max Bonomi: Interoperability, AI-generated ensembles, and recognizing all contributions to science
Q: What excites you the most about the future of the field?
Bonomi expressed excitement about AI's potential to characterize conformational landscapes more exhaustively than traditional methods.
Episode 2 - Max Bonomi: Interoperability, AI-generated ensembles, and recognizing all contributions to science
Q: What got you engaged in so many meta-level projects?
Bonomi explained that his engagement started with the development of Plumed during his PhD, aiming for a unified implementation of metadynamics.
Episode 8 - Rossen Apostolov [BioExcel]: Managing scientific collaboration, the biggest project of European biophysics, and seeding schools of thought
Q: Do you think this format of the Excellence Center is replicable elsewhere?
Yes, the concept is replicable if there is a willingness among partners to collaborate and establish clear objectives while striving for excellence in all activities.

Audience Metrics

Listeners, social reach, demographics and more for this podcast.

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Frequently Asked Questions About Phase Space Invaders

What is Phase Space Invaders about and what kind of topics does it cover?

This podcast features in-depth discussions with leading experts in computational biology, focusing on the latest advancements in the field and its intersection with life sciences. Guests often share their cutting-edge research and explore themes such as molecular dynamics, drug design, and the complexities of scientific publishing. Noteworthy topics include the integration of artificial intelligence with traditional methodologies, the role of interdisciplinary collaboration in advancing science, and insights into navigating academic careers. The engaging conversations aim to not only enlighten veterans in the field but also inspire newcomers to explore the vast opportunities within computational biology.

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Which podcasts are similar to Phase Space Invaders?

These podcasts share a similar audience with Phase Space Invaders:

1. Owl Posting
2. Interesting Times with Ross Douthat
3. The Ezra Klein Show
4. Radiolab

How many episodes of Phase Space Invaders are there?

Phase Space Invaders launched 2 years ago and published 33 episodes to date. You can find more information about this podcast including rankings, audience demographics and engagement in our podcast database.

How do I contact Phase Space Invaders?

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What guests have appeared on Phase Space Invaders?

Recent guests on Phase Space Invaders include:

1. Kresten Lindorff-Larsen
2. Pratyush Tiwary
3. Ivet Bahar
4. Katarzyna Marcinkiewicz
5. Zoe Cournia
6. Tamar Schlick
7. Erik Lindahl
8. Caroline Lynn Kamerlin

To view more recent guests and their details, simply upgrade your Rephonic account. You'll also get access to a typical guest profile to help you decide if the show is worth pitching.

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